Installation

We recommend Python v3.6 or higher.

PyPI, Virtualenv, or Anaconda

Install evolocity from PyPI using:

python -m pip install evolocity

If you get a Permission denied error, use python -m pip install evolocity --user instead.

Dependencies

• anndata - annotated data object.

• scanpy - toolkit for high-dimensional data analysis.

• numpy, scipy, pandas, scikit-learn, matplotlib.

Using fast neighbor search via hnswlib further requires (optional):

pip install pybind11 hnswlib